In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data

{.tabset}

Overview

Started on r format(Sys.time(), "%Y-%m-%d %H:%M:%S")

knitr::opts_chunk$set(echo = TRUE, warning = TRUE, message = TRUE, knitr.table.format = "html")
## generate all graphs as PDF
## knitr::opts_chunk$set(dev = "cairo_pdf")

library(kableExtra)
library(pheatmap)
library(tidyverse)
library(scran)
library(RColorBrewer)
library(plotly)
library(SingleR)
library(scater)
library(Seurat)
library(ezRun)
library(HDF5Array)
library(BiocParallel)
library(speckle)

## load all input here

My Fancy Analysis

SessionInfo

ezSessionInfo()

uzh/ezRun documentation built on March 5, 2025, 3:41 p.m.