PlotData: Make QC plots

In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data

Make QC plots

Description

Create QC plots from data obtained through readData()

Usage

PlotData(
  sampleIDs,
  output.dir,
  sampleGroups = NA,
  minPercent_exogenousRibosomal = 0.5,
  minPercent_exogenousGenomes = 0.5
)

Arguments

sampleIDs	<string> names of the samples obtained through readData()
output.dir	<string> directory to which output the files to create the report.
sampleGroups	<string> if any sample groups were defined. Deprecated.
minPercent_exogenousRibosomal	<double> Not used.
minPercent_exogenousGenomes	<double> Not used.

Author(s)

(Rob Kitchen) Miquel Anglada Girotto

uzh/ezRun documentation built on March 5, 2025, 3:41 p.m.