convertGtfToGff: Convert annotation file from GTF format to GFF

In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data

Convert annotation file from GTF format to GFF

Description

convertGtfToGff converts an annotation file from the GTF format into the GFF format which is required by the package DEXSeq. Input file name and the name of the file to be generated are both given as function parameters. The conversion is done by a python script that is given by the content of DEXSEQ_PREPARE which is taken from the result of function lGetPyScriptPaths

Usage

convertGtfToGff(psGtfFile, psGffFile)

Arguments

psGtfFile	name of the GTF annotation file
psGffFile	name of the GFF file to be generated

uzh/ezRun documentation built on April 24, 2024, 4:01 p.m.