convertGtfToGff: Convert annotation file from GTF format to GFF
In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data
convertGtfToGff R Documentation
Convert annotation file from GTF format to GFF
Description
convertGtfToGff converts an annotation file from
the GTF format into the GFF format which is required
by the package DEXSeq. Input file name and the
name of the file to be generated are both given as
function parameters. The conversion is done by a python
script that is given by the content of DEXSEQ_PREPARE
which is taken from the result of function
lGetPyScriptPaths
Usage
convertGtfToGff(psGtfFile, psGffFile)
Arguments
psGtfFile
name of the GTF annotation file
psGffFile
name of the GFF file to be generated
uzh/ezRun documentation built on Dec. 26, 2024, 9:53 a.m.
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| convertGtfToGff | R Documentation |
Convert annotation file from GTF format to GFF
Description
convertGtfToGff converts an annotation file from
the GTF format into the GFF format which is required
by the package DEXSeq. Input file name and the
name of the file to be generated are both given as
function parameters. The conversion is done by a python
script that is given by the content of DEXSEQ_PREPARE
which is taken from the result of function
lGetPyScriptPaths
Usage
convertGtfToGff(psGtfFile, psGffFile)
Arguments
psGtfFile |
name of the GTF annotation file |
psGffFile |
name of the GFF file to be generated |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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