ezBam2bigwig: Converts from bam to bigwig

In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data

Converts from bam to bigwig

Description

Converts a bam file into a bigwig file.

Usage

ezBam2bigwig(bamFile, bigwigPrefix, param = NULL, paired = NULL)

Arguments

bamFile	a character representing the bam file path.
bigwigPrefix	a character representing a prefix to add to the bigwig file names.
param	a list of parameter to extract the strandMode from.
paired	a logical indicating whether the samples are paired.

Author(s)

Rehrauer, Hubert

Schmid, Peter

See Also

scanBamHeader

Examples

bamFile <- system.file("extdata", "ex1.bam", package="Rsamtools", mustWork=TRUE)
ezBam2bigwig(bamFile, bigwigPrefix="bg", param=ezParam(), paired=TRUE)

uzh/ezRun documentation built on Sept. 16, 2024, 11:21 p.m.