ezBamSeqNames: Gets sequence names
In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data
ezBamSeqNames R Documentation
Gets sequence names
Description
Gets sequence names from a bam file.
Usage
ezBamSeqNames(bamFile, sizeSorting = "decreasing")
ezBamSeqLengths(bamFile)
Arguments
bamFile
a character representing the bam file path.
sizeSorting
a character. if equal to "decreasing" the names will be sorted decreasingly.
Value
Returns a character vector of sequence names.
Functions
-
ezBamSeqLengths: Gets the sequence lengths from a bam file.
Author(s)
Rehrauer, Hubert
Schmid, Peter
Examples
bamFile <- system.file("extdata", "ex1.bam", package="Rsamtools", mustWork=TRUE)
ezBamSeqLengths(bamFile)
ezBamSeqNames(bamFile)
uzh/ezRun documentation built on Dec. 26, 2024, 9:53 a.m.
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| ezBamSeqNames | R Documentation |
Gets sequence names
Description
Gets sequence names from a bam file.
Usage
ezBamSeqNames(bamFile, sizeSorting = "decreasing")
ezBamSeqLengths(bamFile)
Arguments
bamFile |
a character representing the bam file path. |
sizeSorting |
a character. if equal to "decreasing" the names will be sorted decreasingly. |
Value
Returns a character vector of sequence names.
Functions
-
ezBamSeqLengths: Gets the sequence lengths from a bam file.
Author(s)
Rehrauer, Hubert
Schmid, Peter
Examples
bamFile <- system.file("extdata", "ex1.bam", package="Rsamtools", mustWork=TRUE)
ezBamSeqLengths(bamFile)
ezBamSeqNames(bamFile)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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