ezMethodFastpTrim: Trims input reads using fastp (Chen et al. 2018)

In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data

Trims input reads using fastp (Chen et al. 2018)

Description

Trims input reads. The trimming happens in the following order:

• global trimming fron and tail

• quality window

• avg quality

• adapter

• trim polyG (by default, only for NextSeq and NovaSeq)

• fixed trimming

• length filtering

This means if you specify a fixed trimming this comes on top of the adapter trimming

Usage

ezMethodFastpTrim(input = NA, output = NA, param = NA)

uzh/ezRun documentation built on March 5, 2025, 3:41 p.m.