ezPresentFlags: Which values to keep?

In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data

Which values to keep?

Description

Returns TRUE for values that are considered as measured correctly and that are over a threshold, if one is used.

Usage

ezPresentFlags(x, presentFlag = NULL, param = NULL, isLog = FALSE)

Arguments

x	a matrix with row and column names.
presentFlag	a binary matrix with the same size as x which indicates if a values is considered as measured correctly.
param	contains a threshold and whether it should be used. sigThresh the threshold... useSigThresh ...and whether it should be used.
isLog	a logical indicating whether the log2() of the threshold should be used.

Value

Returns a logical matrix.

Author(s)

Rehrauer, Hubert

Schmid, Peter

Examples

m1 = matrix(1:20,5)
rownames(m1) = letters[1:5]
colnames(m1) = letters[6:9]
ezPresentFlags(m1, param=list(useSigThresh=TRUE, sigThresh=10))

uzh/ezRun documentation built on Sept. 16, 2024, 11:21 p.m.