filterEnrichrResults: Result filtering

In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data

Result filtering

Description

Filters the results returned by Enrichr. Libraries that fail to yield any significant results are removed. However, libraries that contain significant results, retain all records whether significant or not)

Usage

filterEnrichrResults(
  resList,
  maxP = 1,
  maxPAdj = 1,
  maxZ = 0,
  minCombinedScore = 0,
  minOverlapGenes = 3,
  softFilter = F,
  maxResult = NA
)

Arguments

resList	list of results, i.e. success field in the list returned by enrichrEnrich
maxP	p-value threshold (maximum)
maxPAdj	adjusted p-value threshold (maximum)
maxZ	z-value threshold (maximum)
minCombinedScore	combined score threshold (minimum)
minOverlapGenes	minimum number of genes in the overlap
softFilter	select libraries with at least one significant result but report all results
maxResult	maximum number of results to return

Value

list that contains the results for libraries with at least one significant gene that satisfies the criteria.

Author(s)

Rehrauer, Hubert

Schmid, Peter

Roman Briskine

See Also

runEnrichr, enrichrEnrich

uzh/ezRun documentation built on April 24, 2024, 4:01 p.m.