fixStrand: Fixes the strand information

In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data

Fixes the strand information

Description

Fixes the strand information by either leaving it as it is, flipping it or setting both.

Usage

fixStrand(strandValues, strandMode = "sense")

flipStrand(strandValues)

Arguments

strandValues	a set of strand values + - and *.
strandMode	a character defining what should be done with the values: sense returns strandValues without modifying them. antisense returns the flipped strandValues. both sets all the strandValues to "*".

Value

Returns a character vector or Rle object containing the strand information.

Functions

• flipStrand: This function performs the flipping of the strand values.

Author(s)

Rehrauer, Hubert

Schmid, Peter

Examples

strandValues = c("+","+","-","*")
fixStrand(strandValues, "sense")
flipStrand(strandValues)

uzh/ezRun documentation built on April 19, 2024, 8:25 a.m.