getBamMultiMatching: Gets bam multi matching
In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data
getBamMultiMatching R Documentation
Gets bam multi matching
Description
Gets bam multi matching and returns the result as an integer vector.
Usage
getBamMultiMatching(param, bamFile, nReads = NULL)
Arguments
param
a list of parameters:
paired a logical indicating whether the samples are paired.
bamFile
a character representing the bam file path.
nReads
an integer specifying the number of reads. These additional reads will be counted in "0"
Value
Returns a integer vector specifying the amount of matching reads.
Author(s)
Rehrauer, Hubert
Schmid, Peter
Examples
param = ezParam()
bamFile <- system.file("extdata", "ex1.bam", package="Rsamtools", mustWork=TRUE)
getBamMultiMatching(param, bamFile, nReads=10000)
uzh/ezRun documentation built on April 19, 2024, 8:25 a.m.
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| getBamMultiMatching | R Documentation |
Gets bam multi matching
Description
Gets bam multi matching and returns the result as an integer vector.
Usage
getBamMultiMatching(param, bamFile, nReads = NULL)
Arguments
param |
a list of parameters:
|
bamFile |
a character representing the bam file path. |
nReads |
an integer specifying the number of reads. These additional reads will be counted in "0" |
Value
Returns a integer vector specifying the amount of matching reads.
Author(s)
Rehrauer, Hubert
Schmid, Peter
Examples
param = ezParam()
bamFile <- system.file("extdata", "ex1.bam", package="Rsamtools", mustWork=TRUE)
getBamMultiMatching(param, bamFile, nReads=10000)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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