getQualityMatrix: Get quality matrix
In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data
getQualityMatrix R Documentation
Get quality matrix
Description
Get quality matrix from FastQ file.
Usage
getQualityMatrix(fn)
Arguments
fn
character(1): path of a fastq file.
Details
Subsample no more than 300k reads to get the statistics.
Value
A matrix of occurency of each quality per base.
Rows are quality value and columns are base positions.
Author(s)
Ge Tan
Examples
## Not run:
fn <- "/srv/gstore/projects/p2438/HiSeq4000_20170601_RUN346_copy_o3365/20170601.B-19TK_d7_R1.fastq.gz"
getQualityMatrix(fn)
## End(Not run)
uzh/ezRun documentation built on Dec. 26, 2024, 9:53 a.m.
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| getQualityMatrix | R Documentation |
Get quality matrix
Description
Get quality matrix from FastQ file.
Usage
getQualityMatrix(fn)
Arguments
fn |
|
Details
Subsample no more than 300k reads to get the statistics.
Value
A matrix of occurency of each quality per base.
Rows are quality value and columns are base positions.
Author(s)
Ge Tan
Examples
## Not run:
fn <- "/srv/gstore/projects/p2438/HiSeq4000_20170601_RUN346_copy_o3365/20170601.B-19TK_d7_R1.fastq.gz"
getQualityMatrix(fn)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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