getReferenceFeaturesBed: Gets a bed file
In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data
View source: R/ngsReferenceFiles.R
getReferenceFeaturesBed R Documentation
Gets a bed file
Description
Gets a bed file from a gtf annotation file.
Usage
getReferenceFeaturesBed(param)
Arguments
param
a list of parameters to extract ezRef@refFeatureFile from.
Value
Returns the path to the created bed file.
Author(s)
Rehrauer, Hubert
Schmid, Peter
Examples
## Not run:
param = ezParam()
param$ezRef@refFeatureFile = system.file("extdata/genes.gtf", package="ezRun", mustWork=TRUE)
rfbed = getReferenceFeaturesBed(param)
## End(Not run)
uzh/ezRun documentation built on April 19, 2024, 8:25 a.m.
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View source: R/ngsReferenceFiles.R
| getReferenceFeaturesBed | R Documentation |
Gets a bed file
Description
Gets a bed file from a gtf annotation file.
Usage
getReferenceFeaturesBed(param)
Arguments
param |
a list of parameters to extract |
Value
Returns the path to the created bed file.
Author(s)
Rehrauer, Hubert
Schmid, Peter
Examples
## Not run:
param = ezParam()
param$ezRef@refFeatureFile = system.file("extdata/genes.gtf", package="ezRun", mustWork=TRUE)
rfbed = getReferenceFeaturesBed(param)
## End(Not run)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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