pasteExcerptCmd: create appropriate command line call.

In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data

create appropriate command line call.

Description

paste character strings to create the adequate shell command to execute exceRpt_smallRNA.

Usage

pasteExcerptCmd(readFile, outputDir, param)

Arguments

readFile	<string> full path of the *.fastq(.gz) input file.
outputDir	<string> directory in which to save the processed outputs created by exceRpt_smallRNA.
param	list() exceRpt_smallRNA parameters.

Author(s)

Miquel Anglada Girotto

uzh/ezRun documentation built on March 5, 2025, 3:41 p.m.