selectFeatures: Selects features from raw data

In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data

Selects features from raw data

Description

Selects features from raw data by looking at "signal" (if specified) or "counts" from rawData.

Usage

selectFeatures(rawData, keep)

Arguments

rawData	a list of raw data obtained from loadCountDataset().
keep	a character vector specifying which signals or counts to keep.

Value

Returns the selected raw data.

Author(s)

Rehrauer, Hubert

Schmid, Peter

Examples

param = ezParam()
param$dataRoot = system.file(package="ezRun", mustWork = TRUE)
file = system.file("extdata/yeast_10k_STAR_counts/dataset.tsv", package="ezRun", mustWork = TRUE)
input = EzDataset$new(file=file, dataRoot=param$dataRoot)
rawData = loadCountDataset(input, param)
keep = "YFR014C"
rd2 = selectFeatures(rawData, keep)

uzh/ezRun documentation built on Dec. 26, 2024, 9:53 a.m.