writePresplicedGtf: Writes pre-spliced annotation
In uzh/ezRun: An R meta-package for the analysis of Next Generation Sequencing Data
writePresplicedGtf R Documentation
Writes pre-spliced annotation
Description
Writes pre-spliced annotation directly from the parameters into a new .gtf file.
Usage
writePresplicedGtf(param, featureFile = param$ezRef["refFeatureFile"])
Arguments
param
contains the feature file to load the annotation from.
featureFile
the file to load the features in the ezLoadFeatures() call from.
Author(s)
Rehrauer, Hubert
Schmid, Peter
See Also
ezLoadFeatures
Examples
param = ezParam()
writePresplicedGtf(param, system.file("extdata/genes.gtf", package="ezRun", mustWork=TRUE))
uzh/ezRun documentation built on Dec. 26, 2024, 9:53 a.m.
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| writePresplicedGtf | R Documentation |
Writes pre-spliced annotation
Description
Writes pre-spliced annotation directly from the parameters into a new .gtf file.
Usage
writePresplicedGtf(param, featureFile = param$ezRef["refFeatureFile"])
Arguments
param |
contains the feature file to load the annotation from. |
featureFile |
the file to load the features in the |
Author(s)
Rehrauer, Hubert
Schmid, Peter
See Also
ezLoadFeatures
Examples
param = ezParam()
writePresplicedGtf(param, system.file("extdata/genes.gtf", package="ezRun", mustWork=TRUE))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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