upperGroups: Detect uppercases as ranges object.
In valenlab/amplican: Automated analysis of CRISPR experiments
View source: R/helpers_general.R
upperGroups R Documentation
Detect uppercases as ranges object.
Description
For a given string, detect how many groups of uppercases is inside, where
are they, and how long they are.
Usage
upperGroups(candidate)
Arguments
candidate
(string) A string with the nucleotide sequence.
Details
For example:
asdkfaAGASDGAsjaeuradAFDSfasfjaeiorAuaoeurasjfasdhfashTTSfajeiasjsf
Has 4 groups of uppercases of length 7, 4, 1 and 3.
Value
(IRanges) A IRanges object with uppercases groups for
given candidate string
valenlab/amplican documentation built on Jan. 28, 2024, 5:10 a.m.
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View source: R/helpers_general.R
| upperGroups | R Documentation |
Detect uppercases as ranges object.
Description
For a given string, detect how many groups of uppercases is inside, where are they, and how long they are.
Usage
upperGroups(candidate)
Arguments
candidate |
(string) A string with the nucleotide sequence. |
Details
For example: asdkfaAGASDGAsjaeuradAFDSfasfjaeiorAuaoeurasjfasdhfashTTSfajeiasjsf
Has 4 groups of uppercases of length 7, 4, 1 and 3.
Value
(IRanges) A IRanges object with uppercases groups for
given candidate string
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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