create_pseudobulk_mat: Create Pseudo-Bulk Matrice from scRNA clusters & replicates

In vallotlab/IDclust: Iterative Differential Clustering for single-cell

Create Pseudo-Bulk Matrice from scRNA clusters & replicates

Description

Create Pseudo-Bulk Matrice from scRNA clusters & replicates

Usage

create_pseudobulk_mat(object, ...)

Arguments

object
...

Examples

if(requireNamespace("Seurat", quietly=TRUE)){
data("Seu", package = "IDclust")
mat <- create_pseudobulk_mat(Seu, by = "seurat_clusters")
}

#' if(requireNamespace("SingleCellExperiment", quietly=TRUE)){
data("scExp", package = "IDclust")
mat <- create_pseudobulk_mat(scExp, by = "cell_clusters")
}

vallotlab/IDclust documentation built on Feb. 16, 2023, 8:58 a.m.