differential_edgeR_pseudobulk_LRT: Pseudo-bulk differential analysis with edgeR (LRT)

In vallotlab/IDclust: Iterative Differential Clustering for single-cell

Pseudo-bulk differential analysis with edgeR (LRT)

Description

Pseudo-bulk differential analysis with edgeR (LRT)

Usage

differential_edgeR_pseudobulk_LRT(object, ...)

Arguments

object
...

Examples

if(requireNamespace("Seurat", quietly=TRUE)){
data("Seu", package = "IDclust")
DA <- differential_edgeR_pseudobulk_LRT(Seu)
}
if(requireNamespace("SingleCellExperiment", quietly=TRUE)){
data("scExp", package = "IDclust")
DA <- differential_edgeR_pseudobulk_LRT(scExp)
}

vallotlab/IDclust documentation built on Feb. 16, 2023, 8:58 a.m.