genbank_search: Search GenBank
In vaulot/dvutils: A set of utilities
Description
Usage
Arguments
Value
Examples
Description
Return sequences summary information from an ENTREZ search query
Usage
1
genbank_search(query, db = "nuccore", seq_max = 20000)
Arguments
query
Character string for ENTREZ search
db
Character string for database to be used
seq_max
Maximum number of sequences to obtain
Value
Data frame with columns with information about the sequences
genbank_accession
gb_definition
gb_date
gb_organism
...
Examples
1
genbank_search(query = "28S[TITL] AND rRNA[TITL] AND Chlorophyta[ORGN]", seq_max = 500)
vaulot/dvutils documentation built on Nov. 20, 2021, 11:01 a.m.
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Description Usage Arguments Value Examples
Description
Return sequences summary information from an ENTREZ search query
Usage
1 | genbank_search(query, db = "nuccore", seq_max = 20000)
|
Arguments
query |
Character string for ENTREZ search |
db |
Character string for database to be used |
seq_max |
Maximum number of sequences to obtain |
Value
Data frame with columns with information about the sequences
genbank_accession
gb_definition
gb_date
gb_organism
...
Examples
1 | genbank_search(query = "28S[TITL] AND rRNA[TITL] AND Chlorophyta[ORGN]", seq_max = 500)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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