kmer_set: Get all kmers in a set of sequence
In vaulot/dvutils: A set of utilities
Description
Usage
Arguments
Value
To do
Description
From a set of sequences with name provided, it returns a data frame with the kmer common to
all sequences from the list. It contains 4 columns: sequence, ref_sequence, start, end.
The start and end correspond to the position of the kmers on the reference sequences.
Usage
1
Arguments
seq_name
Vector containing the sequence names (eg accession)
sequence
Vector containing the actual sequences
kmer_width
kmer size
Value
A data frame with 4 columns
To do
This may break down if the same kmer is found twice...
vaulot/dvutils documentation built on Nov. 20, 2021, 11:01 a.m.
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Description Usage Arguments Value To do
Description
From a set of sequences with name provided, it returns a data frame with the kmer common to all sequences from the list. It contains 4 columns: sequence, ref_sequence, start, end.
The start and end correspond to the position of the kmers on the reference sequences.
Usage
1 |
Arguments
seq_name |
Vector containing the sequence names (eg accession) |
sequence |
Vector containing the actual sequences |
kmer_width |
kmer size |
Value
A data frame with 4 columns
To do
This may break down if the same kmer is found twice...
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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