genbank_download_parse_rentrez: Download and parse sequences from GenBank using rentrez only

Description Usage Arguments Value Examples

View source: R/genbank.R

Description

Does not write the GenBank file. Notes:

Usage

1
genbank_download_parse_rentrez(accession, sequence_keep = TRUE, acc_step = 50)

Arguments

accession

Character vector of accession numbers

sequence_keep

Logical, if FALSE the sequence is not returned in the file data frame

acc_step

Integer, number of accession numbers for each query.

Value

Data frame with the metadata information.

Examples

1
gb_metadata <- genbank_download_parse(accession = c("JX015376", "JQ768406", "LT621940"), sequence_keep=TRUE)

vaulot/dvutils documentation built on Nov. 20, 2021, 11:01 a.m.