Files in venelin/POUMM
The Phylogenetic Ornstein-Uhlenbeck Mixed Model

.Rbuildignore
.gitattributes
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md R/POUMM.R R/fitPOUMM.R R/likPOUMM.R R/paramsPOUMM.R R/specPOUMM.R R/summaryPOUMM.R R/utilities.R R/vignetteCachedResults.R README.Rmd README.md
_pkgdown.yml
benchmark/.gitignore
benchmark/LikelihoodCalculationTimes.Rmd benchmark/LikelihoodCalculationTimes.pdf benchmark/microbenchmark.R
benchmark/runMicrobenchmark.sh
benchmark/testOMP.R
codecov.yml
cran-comments.md
data/vignetteCachedResults.rda
docs/404.html
docs/articles/InterpretingPOUMM.html
docs/articles/InterpretingPOUMM_files/figure-html/unnamed-chunk-7-1.png
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docs/articles/POUMM.html
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docs/articles/REFERENCES-R.bib
docs/articles/REFERENCES.bib
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docs/articles/index.html
docs/authors.html
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docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/H2.html
docs/reference/OU.html
docs/reference/POUMM.html
docs/reference/POUMMIsADevRelease.html
docs/reference/PhylogeneticH2.html
docs/reference/analyseMCMCs.html
docs/reference/chld.html
docs/reference/coef.POUMM.html
docs/reference/covFunPOUMM.html
docs/reference/covHPDFunPOUMM.html
docs/reference/covPOUMM.html
docs/reference/covVTipsGivenTreePOUMM.html
docs/reference/dVNodesGivenTreePOUMM.html
docs/reference/edgesFrom.html
docs/reference/fitted.POUMM.html
docs/reference/gPOUMM.html
docs/reference/index.html
docs/reference/likPOUMMGivenTreeVTips.html
docs/reference/likPOUMMGivenTreeVTipsC.html
docs/reference/logLik.POUMM.html
docs/reference/loglik_abc_g0_g0Prior.html
docs/reference/maxLikPOUMMGivenTreeVTips.html
docs/reference/mcmcPOUMMGivenPriorTreeVTips.html
docs/reference/nobs.POUMM.html
docs/reference/nodeTimes.html
docs/reference/plot.POUMM.html
docs/reference/plot.summary.POUMM.html
docs/reference/pruneTree.html
docs/reference/rTrajectoryOU-1.png
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docs/reference/rTrajectoryOU.html
docs/reference/rTrajectoryOUDef.html
docs/reference/rVNodesGivenTreePOUMM.html
docs/reference/residuals.POUMM.html
docs/reference/simulate.html
docs/reference/simulatePOUMMLikelihoodMainLoop.html
docs/reference/simulateTrait.html
docs/reference/specPOUMM.html
docs/reference/specifyPOUMM.html
docs/reference/statistics.html
docs/reference/summary.POUMM.html
docs/reference/validateSpecPOUMM.html
docs/reference/validateZTree.html
docs/reference/vignetteCachedResults.html
docs/sitemap.xml
inst/CITATION
inst/REFERENCES.bib
man/H2.Rd man/OU.Rd man/POUMM.Rd man/POUMMIsADevRelease.Rd man/PhylogeneticH2.Rd man/analyseMCMCs.Rd man/chld.Rd man/coef.POUMM.Rd man/covFunPOUMM.Rd man/covHPDFunPOUMM.Rd man/covPOUMM.Rd man/covVTipsGivenTreePOUMM.Rd man/dVNodesGivenTreePOUMM.Rd man/edgesFrom.Rd man/fitted.POUMM.Rd man/gPOUMM.Rd man/likPOUMMGivenTreeVTips.Rd man/likPOUMMGivenTreeVTipsC.Rd man/logLik.POUMM.Rd man/loglik_abc_g0_g0Prior.Rd man/maxLikPOUMMGivenTreeVTips.Rd man/mcmcPOUMMGivenPriorTreeVTips.Rd man/nobs.POUMM.Rd man/nodeTimes.Rd man/plot.POUMM.Rd man/plot.summary.POUMM.Rd man/pruneTree.Rd man/rTrajectoryOU.Rd man/rTrajectoryOUDef.Rd man/rVNodesGivenTreePOUMM.Rd man/residuals.POUMM.Rd man/simulatePOUMMLikelihoodMainLoop.Rd man/simulateTrait.Rd man/specPOUMM.Rd man/statistics.Rd man/summary.POUMM.Rd man/validateSpecPOUMM.Rd man/validateZTree.Rd man/vignetteCachedResults.Rd
poumm.Rproj
src/AbcPOUMM.h
src/Makevars
src/Rcpp.cpp
src/SPLITT.h
tests/test-all.R
tests/testthat/.gitignore
tests/testthat/test-fit.R tests/testthat/test-lik.R tests/testthat/test-parameters.R tests/testthat/test-specify.R
vignettes/.gitignore
vignettes/InterpretingPOUMM.Rmd
vignettes/REFERENCES.bib
vignettes/UserGuide.Rmd
venelin/POUMM documentation built on Oct. 25, 2020, 12:07 a.m.