covFunPOUMM: A vectorized expected covariance function for a given tree...
In venelin/POUMM: The Phylogenetic Ornstein-Uhlenbeck Mixed Model
Description
Usage
Arguments
Value
Description
A vectorized expected covariance function for a given tree and a fitted POUMM
model
Usage
1
covFunPOUMM(object, corr = FALSE)
Arguments
object
an S3 object of class POUMM
corr
logical indicating if an expected correlation function
should be returned
For non-ultrametric trees, usually the mean root-tip distance is used.
Value
a function of three numerical parameters:
tau - the phylogenetic distance between a two tips;
tanc - the distance from the root to their most recent common ancestor.
t - the root-tip distance (assuming that the two tips are at equal distance from the root)
venelin/POUMM documentation built on Oct. 25, 2020, 12:07 a.m.
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Description Usage Arguments Value
Description
A vectorized expected covariance function for a given tree and a fitted POUMM model
Usage
1 | covFunPOUMM(object, corr = FALSE)
|
Arguments
object |
an S3 object of class POUMM |
corr |
logical indicating if an expected correlation function should be returned For non-ultrametric trees, usually the mean root-tip distance is used. |
Value
a function of three numerical parameters: tau - the phylogenetic distance between a two tips; tanc - the distance from the root to their most recent common ancestor. t - the root-tip distance (assuming that the two tips are at equal distance from the root)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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