loglik_abc_g0_g0Prior: Processing of the root value and calculation of the maximum...

In venelin/POUMM: The Phylogenetic Ornstein-Uhlenbeck Mixed Model

Processing of the root value and calculation of the maximum log-likelihood for the given coefficients abc, and parameters theta, g0 and g0Prior. This is an internal function.

Description

Processing of the root value and calculation of the maximum log-likelihood for the given coefficients abc, and parameters theta, g0 and g0Prior. This is an internal function.

Usage

loglik_abc_g0_g0Prior(abc, alpha, theta, sigma, g0, g0Prior)

Arguments

abc	a vector of 3 numerical values denoting the corresponding coefficients in the POUMM likelihood presented as exp(a g0^2 + b g0 + c).
alpha, theta, sigma	parameters of the OU-process.
g0	initial value at the root of the tree (can be NA). See argument parMapping in ?specifyPOUMM.
g0Prior	list object. See parameter g0Prior in ?specifyPOUMM.

venelin/POUMM documentation built on June 13, 2025, 10:15 p.m.