loglik_abc_g0_g0Prior: Processing of the root value and calculation of the maximum...
In venelin/POUMM: The Phylogenetic Ornstein-Uhlenbeck Mixed Model
Description
Processing of the root value and calculation of the maximum log-likelihood
for the given coefficients abc, and parameters theta, g0 and g0Prior. This is
an internal function.
Usage
1
loglik_abc_g0_g0Prior(abc, alpha, theta, sigma, g0, g0Prior)
Arguments
abc
a vector of 3 numerical values denoting the corresponding
coefficients in the POUMM likelihood presented as exp(a g0^2 + b g0 + c).
alpha, theta, sigma
parameters of the OU-process.
g0
initial value at the root of the tree (can be NA). See argument
parMapping in ?specifyPOUMM.
g0Prior
list object. See parameter g0Prior in ?specifyPOUMM.
venelin/POUMM documentation built on Oct. 25, 2020, 12:07 a.m.
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Description
Processing of the root value and calculation of the maximum log-likelihood for the given coefficients abc, and parameters theta, g0 and g0Prior. This is an internal function.
Usage
1 | loglik_abc_g0_g0Prior(abc, alpha, theta, sigma, g0, g0Prior)
|
Arguments
abc |
a vector of 3 numerical values denoting the corresponding coefficients in the POUMM likelihood presented as exp(a g0^2 + b g0 + c). |
alpha, theta, sigma |
parameters of the OU-process. |
g0 |
initial value at the root of the tree (can be NA). See argument parMapping in ?specifyPOUMM. |
g0Prior |
list object. See parameter g0Prior in ?specifyPOUMM. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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