covHPDFunPOUMM: A vectorized function returning HPD intervals of the expected...

In venelin/POUMM: The Phylogenetic Ornstein-Uhlenbeck Mixed Model

Description

A vectorized function returning HPD intervals of the expected covariance for a given tree and a fitted POUMM model

Usage

covHPDFunPOUMM(object, prob = 0.95, corr = FALSE, ...)

Arguments

object	an S3 object of class POUMM
prob	a Numerical between 0 and 1
corr	logical indicating if an expected correlation HPD interval function should be returned.
...	additional parameters passed to summary.POUMM

Value

a function of a numerica matrix x with 3 columns corresponding to tau, tanc and t (see covFunPOUMM). The function reteruns a two-colun matrix with the lower and upper limit of the HPD for each row in the input matrix.

venelin/POUMM documentation built on Oct. 25, 2020, 12:07 a.m.