API for vladimirsouza/lrRNAseqBenchmark
Figure out how to call varaints from Iso-Seq data
| Global functions | |
|---|---|
| add_a_method_indel_information_to_master_table | Man page Source code |
| add_format_tag_from_vcf | Man page Source code |
| add_homopolymer_length_when_indels | Man page Source code |
| add_info_tag_from_vcf | Man page Source code |
| add_method_vs_truth_comparison_to_master_table | Man page Source code |
| add_number_of_n_cigar_reads_to_master_table | Man page Source code |
| add_qual_from_vcf | Man page Source code |
| add_read_coverage_from_bam_to_master_table | Man page Source code |
| add_some_read_statistic_from_bam_metacolumn | Man page Source code |
| add_splice_site_info_to_master_table | Man page Source code |
| add_the_ground_truth_indel_information_to_master_table | Man page Source code |
| add_two_method_comparison_to_master_table | Man page Source code |
| add_variant_density_of_a_method | Man page Source code |
| add_variant_type_to_master_table | Man page Source code |
| calc_accuracy_measures | Man page Source code |
| calculate_precision_recall_for_coverage_ranges | Man page Source code |
| calculate_precision_recall_for_multi_master_tables | Man page Source code |
| calculate_precision_recall_for_multi_master_tables2 | Man page Source code |
| calculate_precision_recall_for_n_cigar_read_count_intervarls | Man page Source code |
| check_accuracy_per_coverage | Man page Source code |
| get_splice_sites_info | Man page Source code |
| get_splice_sites_info2 | Man page Source code |
| gt_vt_method | Man page Source code |
| igv_batch_screenshots | Man page Source code |
| initiate_master_table | Man page Source code |
| is_indel_method | Man page Source code |
| make_homopolymer_plot | Man page Source code |
| make_homopolymer_table_to_plot | Man page Source code |
| method_homopolymer_indels | Man page Source code |
| precision_recall_curve_per_coverage | Man page Source code |
| splice_junction_analysis_table | Man page Source code |
| standardize_genotype | Man page Source code |
