add_splice_site_info_to_master_table: Add columns about spice sites to a master table

In vladimirsouza/lrRNAseqBenchmark: Figure out how to call varaints from Iso-Seq data

Add columns about spice sites to a master table

Description

Add columns about spice sites to a master table

Usage

add_splice_site_info_to_master_table(
  input_table,
  splice_sites,
  max_dist_from_splice_site = 20,
  multiply_max_dist = 100
)

Arguments

input_table	A data.frame generated by initiate_master_table.
splice_sites	A data.frame generated by get_splice_sites_info.
max_dist_from_splice_site	A 1-length integer (default is 20) that indicates the the maximum distance of a varaint from any splice site to consider it a variant near a splice site.
multiply_max_dist	A 1-length integer (default is 100). To create the column 'ss_shortest_dist' from column 'ss_dist', NA values (which means variables far from any splice site) are converted to integers. To make these integers be a high value, they are set to max_dist_from_splice_site * multiply_max_dist.

Value

A data.frame.

vladimirsouza/lrRNAseqBenchmark documentation built on March 23, 2023, 7:32 a.m.