add_some_read_statistic_from_bam_metacolumn: Add some statistic of a tag about reads of a BAM file

In vladimirsouza/lrRNAseqBenchmark: Figure out how to call varaints from Iso-Seq data

Add some statistic of a tag about reads of a BAM file

Description

Add some statistic of a tag about reads of a BAM file

Usage

add_some_read_statistic_from_bam_metacolumn(
  input_table,
  col_name,
  galn,
  tag,
  stat
)

Arguments

input_table	A data.frame. The input master table.
col_name	A 1-length string. The name of the new column to add.
galn	A GAlignment object. The alingnment from where the tag is extracted.
tag	A 1-length string. The name of tag that is wanted to calculate the statistic 'stat'. The name must be exactly the same of one column name from 'mcols(galn)'.
stat	A function used to calculate the desired statistic.

Value

A data.frame.

vladimirsouza/lrRNAseqBenchmark documentation built on March 23, 2023, 7:32 a.m.