calculate_precision_recall_for_multi_master_tables: Calculate accuracy measures for multiple master tables

In vladimirsouza/lrRNAseqBenchmark: Figure out how to call varaints from Iso-Seq data

Calculate accuracy measures for multiple master tables

Description

Create a data.frame with accuracy measures for multiple master tables.

Usage

calculate_precision_recall_for_multi_master_tables(
  ...,
  experiment_names,
  method_names,
  output_method_names = NULL,
  data_names,
  truth_names,
  coverage_thresholds = c(3, 15, 40, 100),
  what
)

Arguments

...	Master tables.
experiment_names	Vector of strings. Name of the experiments in the same order of the master tables.
method_names	Vector or list of strings. Names of the methods to compare. If all experiments compare the same methods, 'method_names' can be a single vector. Otherwise, 'method_names' must be a list, in which each element specifies the names of the methods to compare for each experiment.
output_method_names	NULL (default), or a vector or a list of strings. Names of the methods to output.
data_names	Vector or list of strings.
truth_names	Vector or list of strings.
coverage_thresholds	Vector or list of integers.
what	Vector or list of strings.

Value

A data.frame.

vladimirsouza/lrRNAseqBenchmark documentation built on March 23, 2023, 7:32 a.m.