add_number_of_n_cigar_reads_to_master_table: Add the count of N-cigar reads to the master table

In vladimirsouza/lrRNAseqBenchmark: Figure out how to call varaints from Iso-Seq data

Add the count of N-cigar reads to the master table

Description

This function adds a new column to a master table with the counts of N-cigar reads that overlap each site.

Usage

add_number_of_n_cigar_reads_to_master_table(
  input_table,
  input_bam,
  dataset_name = NULL
)

Arguments

input_table	A data.frame. The master table to add the new column.
input_bam	A 'GenomicAlignments' object from which N-cigar-read counts are got.
dataset_name	A 1-length string used to set the name of the new column.

Value

A data.frame.

vladimirsouza/lrRNAseqBenchmark documentation built on March 23, 2023, 7:32 a.m.