add_method_vs_truth_comparison_to_master_table: Add classiffication of variants calls by comparing to the...

In vladimirsouza/lrRNAseqBenchmark: Figure out how to call varaints from Iso-Seq data

Add classiffication of variants calls by comparing to the ground-truth to a master table

Description

Compare variants calls of a method to the ground-truth and classify each one as true-positiove (TP), false-negative (FN), false-positive (FP), or true-negative (TN).

Usage

add_method_vs_truth_comparison_to_master_table(
  input_table,
  method_name,
  truth_name,
  replace_column = FALSE
)

Arguments

input_table	A data.frame. The master table to add the new column.
method_name	A 1-length string. The name of the method to compare to the ground-truth.
truth_name	A 1-length string. The name of the ground-truth.
replace_column	1-length boolean (default is FALSE). If the classification column already exists and it is desired to replace it.

Value

A data.frame.

vladimirsouza/lrRNAseqBenchmark documentation built on March 23, 2023, 7:32 a.m.