README.md

In vladpetyuk/vp.misc: Miscellaneous functions used by Vlad Petyuk for proteomics data analysis

The package has been moved to PNNL-Comp-Mass-Spec as MSnSet.utils. This repository may or may not be maintained.

vp.misc

Installation

Make sure package devtools is installed.

To install vp.misc run

devtools::install_github("vladpetyuk/vp.misc")

By default install_github does not compile vignettes. Thus to compile with vignettes use the following options.

devtools::install_github("vladpetyuk/vp.misc", build = TRUE, build_opts = c("--no-resave-data", "--no-manual"))

Description

This is a collection of misc custom functions. They are primarily geared towards proteomics/perhaps-other-omics data analysis using MSnSet or ExpressionSet as data containers. heatmaps colorschemes nested linear models wrappers for the machine learning routines custom imputation reading of MaxQuant and SkyLine data * handling PTM mapping

vladpetyuk/vp.misc documentation built on June 25, 2021, 6:35 a.m.