Files in vladpetyuk/vp.misc
Miscelaneuos functions used by Vlad Petyuk for proteomics data analysis

.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/colorschemes.R R/concatenate_by_features.R R/custom_dist.R R/data.R R/eset_lm_1.R R/exhaustive_ratios.R R/heatmap.3.R R/heatmap.plus.2.R R/image_msnset.R R/knn_imputation.r R/limma_a_b.R R/list_objects.R R/lr_modeling.R R/make.unique.2.R R/msnset2txt.R R/norm_by_global.R R/norm_by_ref.R R/normalize_by_feature_property.R R/plotAUC.R R/plot_annHeatmap2.R R/plot_pca.R R/presense_absense.R R/readMaxQuantProtGroups.R R/read_SkyLine.R R/remove_covariate.R R/rf_modeling.R R/rollup.R R/subset_by_size_enrichments.R R/volcano_plot.R R/xtable2.R README.md TODO.md
data/cptac_oca.RData
data/srm_msnset.RData
inst/extdata/MaxQuant/proteinGroups.txt.xz
inst/extdata/MaxQuant/summary.txt
inst/extdata/MaxQuant_O18/proteinGroups.txt.xz
inst/extdata/MaxQuant_O18/summary.txt
man/colorschemes.Rd man/concatenate_by_features.Rd man/dist.Rd man/eset_lm.Rd man/eset_presence_absence.Rd man/exhaustive_ratios.Rd man/heatmap.3.Rd man/heatmap.plus.2.Rd man/image_msnset.Rd man/knn_imputation.Rd man/limma_a_b.Rd man/lr_modeling.Rd man/make.unique.2.Rd man/msnset.Rd man/msnset2txt.Rd man/normalizeByGlob.Rd man/normalizeByRef.Rd man/normalize_by_feature_property.Rd man/oca.set.Rd man/plotAUC.Rd man/plot_annHeatmap2.Rd man/plot_pca_v1.Rd man/readMaxQuantProtGroups.Rd man/readSkyLinePRR.Rd man/remove_covariate.Rd man/rf_modeling.Rd man/rrollup.Rd man/subset_by_size.Rd man/volcano_plot.Rd man/xtable2.Rd sandbox/old_ML/lr_modeling.R sandbox/old_ML/lr_modeling_old.R sandbox/old_ML/rf_modeling.R vignettes/fuzzy_cmeans.Rmd
vignettes/fuzzy_cmeans.html
vignettes/heatmap.plus.2.Rmd
vignettes/heatmap.plus.2.html
vignettes/heatmap_examples.Rmd
vignettes/heatmap_examples.html
vignettes/id_conversion.Rmd
vignettes/id_conversion.html
vignettes/ontology_overrepresentation.Rmd
vignettes/ontology_overrepresentation.html
vignettes/wgcna_example.Rmd
vignettes/wgcna_example.html
vladpetyuk/vp.misc documentation built on Oct. 3, 2017, 3:57 p.m.