image_msnset: Visualize MSnSet

In vladpetyuk/vp.misc: Miscellaneous functions used by Vlad Petyuk for proteomics data analysis

Description

Visualize MSnSet

Usage

image_msnset(
  m,
  valueName = "value",
  facetBy = NULL,
  sOrderBy = NULL,
  fOrderBy = NULL,
  valRange = NULL,
  maxNRows = 50
)

Arguments

m	MSnSet object
valueName	name of the value to be displayed. Default - "value".
facetBy	character of pheno data column containing factor value. Default is NULL.
sOrderBy	character of pheno data telling how to order samples
fOrderBy	character of feature data telling how to order features
valRange	number for the pseudocolor range from -valRange to +valRange. Default is NULL. In that case the scale goes from 0.025 to 0.975 quantile.
maxNRows	maximum number of rows to display. Default is 50.

vladpetyuk/vp.misc documentation built on June 25, 2021, 6:35 a.m.