heatmap.plus.2: Tweak of "heatmap.plus"

In vladpetyuk/vp.misc: Miscellaneous functions used by Vlad Petyuk for proteomics data analysis

Description

This function is basically heatmap.plus from heatmap.plus package. Except with a pair of additional arguments controling the proportion of row and column color sidebars.

Usage

heatmap.plus.2(
  x,
  Rowv = NULL,
  Colv = if (symm) "Rowv" else NULL,
  distfun = dist,
  hclustfun = hclust,
  reorderfun = function(d, w) reorder(d, w),
  add.expr,
  symm = FALSE,
  revC = identical(Colv, "Rowv"),
  scale = c("row", "column", "none"),
  na.rm = TRUE,
  margins = c(5, 5),
  ColSideColors,
  RowSideColors,
  propColSide = 0.1,
  propRowSide = 0.1,
  cexRow = 0.2 + 1/log10(nr),
  cexCol = 0.2 + 1/log10(nc),
  labRow = NULL,
  labCol = NULL,
  main = NULL,
  xlab = NULL,
  ylab = NULL,
  keep.dendro = FALSE,
  verbose = getOption("verbose"),
  ...
)

Arguments

propColSide	numeric controls how much room to allocate for the side color bars. E.g. 0.5 is even split between the heatmap and the bars. Default is 0.1. That is 10% bars, 90% heatmap.
propRowSide	numeric see above

Examples

z = matrix(rnorm(30),nrow=5,ncol=6);
rlab = matrix(as.character(c(1:5,2:6,3:7,4:8)),nrow=5,ncol=4);
clab = matrix(as.character(c(1:6,6:1)),nrow=6,ncol=2);
colnames(rlab) = LETTERS[1:dim(rlab)[2]];
colnames(clab) = 1:dim(clab)[2];
heatmap.plus.2(z, ColSideColors=clab, 
                  RowSideColors=rlab,
                  propColSide=0.1,
                  propRowSide=0.2);

vladpetyuk/vp.misc documentation built on June 25, 2021, 6:35 a.m.