Man pages for vladpetyuk/vp.misc
Miscellaneous functions used by Vlad Petyuk for proteomics data analysis

colorschemesFavorite Colorschemes
concatenate_by_featuresConcatenate MSnSet Objects by Features
distCustomized Distance Function
eset_lmNested Linear Model Analysis
eset_presence_absencePresence/Absence Testing
exhaustive_ratiosExhaustive Ratios
heatmap.3Heatmap
heatmap.plus.2Tweak of "heatmap.plus"
image_msnsetVisualize MSnSet
knn_imputationCustomized K-NN Imputation
limma_a_bWrapper for Limma
lr_modelingLogistic Regression Predictive Models
make.unique.2Custom Make Unique
mixed_effects_anovaMixed Effects ANOVA
msnsetSRM proteomics data from human CSF
msnset2txtExporting MSnSet as text file
normalize_by_feature_propertyNormalization of LC-MS/MS Data
normalizeByGlobBasic Normalization Routines
normalizeByRefNormalization of SRM Data
oca.setCPTAC Ovarian Cancer Proteomics Dataset
plot_annHeatmap2Tweaks of plot.annHeatmap
plotAUCPlot AUC
plot_featurePlotting Individual Protein (Feature)
plot_pca_v1PCA Plot
readMaxQuantPeptidesReading MaxQuant Output
readMaxQuantProtGroupsReading MaxQuant Output
readSkyLinePRRRead SkyLine Results
remove_covariateRemoving Covariate Effect form Expression Data
rf_modelingRandom Forest Predictive Models
rrollupRolling-Up Features Abundance Measurements
subset_by_sizeFilter of ontology enrichment results by size
volcano_plotVolcano Plot
xtable2Customized xtable
vladpetyuk/vp.misc documentation built on Oct. 14, 2018, 7:54 a.m.