phyloseq_otu_appearance: Determine which OTUs appeared or disappeared in comparison...
In vmikk/metagMisc: Miscellaneous functions for metagenomic analysis
View source: R/phyloseq_extract_otus.R
phyloseq_otu_appearance R Documentation
Determine which OTUs appeared or disappeared in comparison with reference sample group.
Description
Determine which OTUs appeared or disappeared in comparison with reference sample group.
Usage
phyloseq_otu_appearance(phys, ref_level)
Arguments
phys
A phyloseq-class object
ref_level
Sample name(s) relative to which appearance or disappearance of OTU will be measured
Value
List with OTU names that appeared, disappeared or remained.
vmikk/metagMisc documentation built on Feb. 14, 2024, 2:29 a.m.
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View source: R/phyloseq_extract_otus.R
| phyloseq_otu_appearance | R Documentation |
Determine which OTUs appeared or disappeared in comparison with reference sample group.
Description
Determine which OTUs appeared or disappeared in comparison with reference sample group.
Usage
phyloseq_otu_appearance(phys, ref_level)
Arguments
phys |
A phyloseq-class object |
ref_level |
Sample name(s) relative to which appearance or disappearance of OTU will be measured |
Value
List with OTU names that appeared, disappeared or remained.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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