phyloseq_replace_zero: Replace zeros in OTU abundance
In vmikk/metagMisc: Miscellaneous functions for metagenomic analysis
View source: R/phyloseq_transform.R
phyloseq_replace_zero R Documentation
Replace zeros in OTU abundance
Description
Replace zeros in OTU abundance
Usage
phyloseq_replace_zero(physeq, method = "pseudocount", pseudocount = 0.65)
Arguments
physeq
A phyloseq-class object
method
Which method to apply for zero replacement ("pseudocount")
pseudocount
Constant value
Value
Phyloseq object with transformed counts in OTU table.
vmikk/metagMisc documentation built on Feb. 14, 2024, 2:29 a.m.
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View source: R/phyloseq_transform.R
| phyloseq_replace_zero | R Documentation |
Replace zeros in OTU abundance
Description
Replace zeros in OTU abundance
Usage
phyloseq_replace_zero(physeq, method = "pseudocount", pseudocount = 0.65)
Arguments
physeq |
A phyloseq-class object |
method |
Which method to apply for zero replacement ("pseudocount") |
pseudocount |
Constant value |
Value
Phyloseq object with transformed counts in OTU table.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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