phyloseq_richness_filter: Remove samples from phyloseq object that have less than n...
In vmikk/metagMisc: Miscellaneous functions for metagenomic analysis
View source: R/phyloseq_filter.R
phyloseq_richness_filter R Documentation
Remove samples from phyloseq object that have less than n taxa
Description
Remove samples from phyloseq object that have less than n taxa
Usage
phyloseq_richness_filter(physeq, mintaxa = 10)
Arguments
physeq
A phyloseq-class object
mintaxa
Minimum number of taxa that should be present in a sample (default, 10)
Value
Trimmed phyloseq object (All samples will have >= N taxa)
Examples
data("esophagus")
esophagus
phyloseq_richness_filter(esophagus, mintaxa = 30)
phyloseq_richness_filter(esophagus, mintaxa = 100)
vmikk/metagMisc documentation built on Feb. 14, 2024, 2:29 a.m.
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View source: R/phyloseq_filter.R
| phyloseq_richness_filter | R Documentation |
Remove samples from phyloseq object that have less than n taxa
Description
Remove samples from phyloseq object that have less than n taxa
Usage
phyloseq_richness_filter(physeq, mintaxa = 10)
Arguments
physeq |
A phyloseq-class object |
mintaxa |
Minimum number of taxa that should be present in a sample (default, 10) |
Value
Trimmed phyloseq object (All samples will have >= N taxa)
Examples
data("esophagus")
esophagus
phyloseq_richness_filter(esophagus, mintaxa = 30)
phyloseq_richness_filter(esophagus, mintaxa = 100)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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