prevalence: Compute prevalence and abundance summary of each species/OTU.
In vmikk/metagMisc: Miscellaneous functions for metagenomic analysis
prevalence R Documentation
Compute prevalence and abundance summary of each species/OTU.
Description
Compute prevalence and abundance summary of each species/OTU.
Usage
prevalence(physeq, add_tax = TRUE)
Arguments
physeq
A phyloseq-class object
add_tax
Logical, add taxonomy to the results
Value
Data frame
Examples
data(esophagus)
prevalence(esophagus)
data(GlobalPatterns)
head( prevalence(GlobalPatterns, add_tax = T) )
vmikk/metagMisc documentation built on Feb. 14, 2024, 2:29 a.m.
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| prevalence | R Documentation |
Compute prevalence and abundance summary of each species/OTU.
Description
Compute prevalence and abundance summary of each species/OTU.
Usage
prevalence(physeq, add_tax = TRUE)
Arguments
physeq |
A phyloseq-class object |
add_tax |
Logical, add taxonomy to the results |
Value
Data frame
Examples
data(esophagus)
prevalence(esophagus)
data(GlobalPatterns)
head( prevalence(GlobalPatterns, add_tax = T) )
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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