ProgenyArray: ProgenyArray.

In vsbuffalo/ProgenyArray: Some statistical genetics for progeny array experiments

Description

ProgenyArray.

Create a new ProgenyArray object for storing genotyping and other data from a progeny array experiment.

Usage

ProgenyArray(progeny_geno, parents_geno, mothers = integer(),
  loci = GRanges(), ref = character(), alt = character())

Arguments

progeny_geno	progeny genotypes matrix (all entries should be 0, 1, 2, or NA)
parents_geno	parents genotypes matrix (all entries should be 0, 1, 2, or NA)
mothers	user-supplied mothers (e.g. known from collection)
loci	a GRanges object of loci
ref	a character vector of reference loci
alt	a character vector of alternate loci

vsbuffalo/ProgenyArray documentation built on May 3, 2019, 6:41 p.m.