SimulatedProgenyArray-class: An S4 class that wraps a ProgenyArray object of noisy,...

Description Slots

Description

An S4 class that wraps a ProgenyArray object of noisy, missing data

Slots

nparent

parent population size

nprogeny

progeny population size

nloci

number of loci

selfing

selfing rate

prop_parent_missing

proportion of genotype data that are missing in parents

prop_progeny_missing

proportion of genotype data that are missing in progeny

ehet

heterozygous error rate

ehom

homozygous error rate

progeny_geno

full genotype matrix for progeny

parent_geno

full genotype matrix for parents

mothers

true mothers of each progeny

fathers

true mothers of each progeny

progeny_array

ProgenyArray object of these data, with missing values and errors


vsbuffalo/ProgenyArray documentation built on May 3, 2019, 6:41 p.m.