plotMCMCDensity: Calculate and plot a posterior density based on an MCMC data...

In wStockhausen/rTCSAM2015: A set of tools to set up input for, and interact with output from, a TCSAM2015 model run, as well as to compare TCSAM2015 and rsimTCSAM runs.

Description

Function to calculate and plot a posterior density based on an MCMC data vector.

Usage

plotMCMCDensity(data, scaleBy = 1, plotEst = TRUE, add = TRUE,
  clr = "cyan", alpha = 0.25, xlim = NULL, ylim = NULL, xlabel = "",
  label = "")

Arguments

data	- the MCMC data from which to estimate the posterior density.
scaleBy	- factor to scale data by
plotEst	- flag (T/F) to plot the MLE estimate (assumed to be 1st value)
add	- flag (T/F) to add to existing plot (creates new plot if FALSE)
clr	- color for density plot
alpha	- transparency value to apply to clr
xlim	- x axis limits (if add=FALSE)
ylim	- y axis limits (if add=FALSE)
xlabel	- label for x axis (if add=FALSE)
label	- label for plot (if add=FALSE)

Details

Uses functions

• wtsUtilities::addTransparency(...)

wStockhausen/rTCSAM2015 documentation built on May 3, 2019, 7:14 p.m.