runProfiles: Function to run profiles on a TCSAM2015 model.

In wStockhausen/rTCSAM2015: A set of tools to set up input for, and interact with output from, a TCSAM2015 model run, as well as to compare TCSAM2015 and rsimTCSAM runs.

Description

This functions runs profiles on a TCSAM2015 model.

Usage

runProfiles(os = "osx", path = ".", model = "tcsam2015",
  path2model = "", configFileTemplate = NULL, controlFileTemplate = NULL,
  profiles = NULL, runSeqs = TRUE, numRuns = 4, mcmc = FALSE,
  mc.N = 1e+06, mc.save = 1000, mc.scale = 1000, plotResults = TRUE)

Arguments

os	- 'win' or 'mac' or 'osx'
path	- path to parent folder for model output
model	- TCSAM2015 model executable name
path2model	- path to model executable
profiles	- dataframe with variables to profile on in each row
runSeqs	- TRUE to run sequences, FALSE to jitter
numRuns	- number of sequences or jitters to run
mcmc	- flag (T/F) to run mcmc on "best" model
mc.N	- number of mcmc iterations to make
mc.save	- number of iterations to skip when saving mcmc calculations
mc.scale	- number of iterations to adjust scale for mcmc calculations
plotResults	- T/F to plot final results within each profile using ???
configFile	- path to model configuration file template
controlFile	- path to model control file template

Details

This function creates a shell script ('./tmp.sh') in the working directory and uses it to run a version of the TCSAM2015 model. Initial model parameters can be jittered based on the system clock time as a seed to the random number generator. The seed and final objective function value are saved for each model run in a csv file (the value of out.csv).

Value

- par file dataframe

wStockhausen/rTCSAM2015 documentation built on May 3, 2019, 7:14 p.m.