addCTLabels: addCTLabels

In waldronlab/SingleCellMultiModal: Integrating Multi-modal Single Cell Experiment datasets

addCTLabels

Description

addCTLabels

Usage

addCTLabels(
  cd,
  out,
  outname,
  ct,
  mkrcol = "markers",
  ctcol = "celltype",
  overwrite = FALSE,
  verbose = TRUE
)

Arguments

cd	the colData DataFrame
out	list data structure returned by getCellGroups
outname	character indicating the name of the out data structure
ct	character indicating the celltype to assign in the ctcol
mkrcol	character indicating the cd column to store the markers indicated by outname (default is markers)
ctcol	character indicating the column in cd to store the cell type indicated by ct (default is celltype)
overwrite	logical indicating if the cell types have to be overwritten without checking if detected barcodes were already assigned to other celltypes
verbose	logical for having informative messages during the execution

Value

an updated version of the cd DataFrame

waldronlab/SingleCellMultiModal documentation built on Nov. 3, 2024, 7:32 p.m.