dot-CITEseqMaeToSce: CITEseqMaeToSce

In waldronlab/SingleCellMultiModal: Integrating Multi-modal Single Cell Experiment datasets

CITEseqMaeToSce

Description

converts a MultiAssayExperiment object with CITEseq data into a SingleCellExperiment object to be used with already known methods and packages in literature.

Note that for creating a SingleCellExperiment object the following function subsets all the assays present in the MultiAssayExperiment with only the common cells across all the modalities. This could result in a not complete object.

Usage

.CITEseqMaeToSce(mae)

Arguments

mae	a MultiAssayExperiment object with scRNA and/or scADT and/or scHTO named experiments.

Value

a SingleCellExperiment object as widely with scRNA data as counts and scADT, scHTO data as altExps. If only one modality is present, it has returned as main assay of the SCE.

waldronlab/SingleCellMultiModal documentation built on Nov. 23, 2024, 3:46 p.m.