.CITEseqMaeToSce | R Documentation |
converts a 'MultiAssayExperiment' object with CITEseq data into a 'SingleCellExperiment' object to be used with already known methods and packages in literature.
Note that for creating a 'SingleCellExperiment' object the following function subsets all the assays present in the 'MultiAssayExperiment' with only the common cells across all the modalities. This could result in a not complete object.
.CITEseqMaeToSce(mae)
mae |
a MultiAssayExperiment object with scRNA and/or scADT and/or scHTO named experiments. |
a SingleCellExperiment object as widely with scRNA data as counts and scADT, scHTO data as altExps. If only one modality is present, it has returned as main assay of the SCE.
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