dot-CITEseqMaeToSce: CITEseqMaeToSce

In waldronlab/SingleCellMultiModal: Integrating Multi-modal Single Cell Experiment datasets

CITEseqMaeToSce

Description

converts a 'MultiAssayExperiment' object with CITEseq data into a 'SingleCellExperiment' object to be used with already known methods and packages in literature.

Note that for creating a 'SingleCellExperiment' object the following function subsets all the assays present in the 'MultiAssayExperiment' with only the common cells across all the modalities. This could result in a not complete object.

Usage

.CITEseqMaeToSce(mae)

Arguments

mae	a MultiAssayExperiment object with scRNA and/or scADT and/or scHTO named experiments.

Value

a SingleCellExperiment object as widely with scRNA data as counts and scADT, scHTO data as altExps. If only one modality is present, it has returned as main assay of the SCE.

waldronlab/SingleCellMultiModal documentation built on Oct. 25, 2023, 6:02 p.m.