ontomap: Obtain a map of cell types for each dataset

In waldronlab/SingleCellMultiModal: Integrating Multi-modal Single Cell Experiment datasets

Obtain a map of cell types for each dataset

Description

The ontomap function provides a mapping of all the cell names across the all the data sets or for a specified data set.

Usage

ontomap(dataset = c("scNMT", "scMultiome", "SCoPE2", "CITEseq", "seqFISH"))

Arguments

dataset

character() One of the existing functions within the package. If missing, a map of all cell types in each function will be provided.

Details

Note that CITEseq does not have any cell annotations; therefore, no entries are present in the ontomap.

Value

A data.frame of metadata with cell types and ontologies

Examples

ontomap(dataset = "scNMT")

waldronlab/SingleCellMultiModal documentation built on Nov. 23, 2024, 3:46 p.m.