Files in wdelva/RSimpactHelp
Pre- and Post-simulation helper functions for RSimpact Cyan

.Rapp.history
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/ART.coverage.calculator.R R/ART.person.years.R R/ART.retention.R R/CD4.atARTinit.R R/Misc/EasyABC.hhohho/easyabc.simpact.simulation.R R/Misc/EasyABC.hhohho/easyabc.simpact.wrapper.R R/Misc/MaxARTFinal.Sim/MaxART.simpact.wrapper.easyABC.run.R R/Misc/MaxARTFinal.Sim/maxart.sim.summary.targets.creator.R R/Misc/MaxARTFinal.Sim/maxart.simpact.parameters.R R/Misc/MaxARTFinal.Sim/maxart.summary.statistics.creator.R R/Misc/Pre.hhohhoMaxARTFinal.Sim/OLD.pre.hho.simpact.wrapper.easyABC.run.R R/Misc/Pre.hhohhoMaxARTFinal.Sim/hho.rsimpacthelper.R R/Misc/Pre.hhohhoMaxARTFinal.Sim/mice.calibration.R R/Misc/Pre.hhohhoMaxARTFinal.Sim/parallel/OLD.pre.hho.simpact.wrapper.easyABC.run.R
R/Misc/Pre.hhohhoMaxARTFinal.Sim/parallel/SummaryOutPut-df-KedzVRYEhM-pdbMPI.csv
R/Misc/Pre.hhohhoMaxARTFinal.Sim/parallel/SummaryOutPut-df-LVjtvpcEPK-pdbMPI.csv
R/Misc/Pre.hhohhoMaxARTFinal.Sim/parallel/SummaryOutPut-df-LVjtvpcEPK.csv
R/Misc/Pre.hhohhoMaxARTFinal.Sim/parallel/T.pre.hho.simpact.wrapper.easyABC.run.R R/Misc/Pre.hhohhoMaxARTFinal.Sim/parallel/pre.hho.simpact.wrapper.easyABC.run.R R/Misc/Pre.hhohhoMaxARTFinal.Sim/pre.hho.sim.summary.targets.creator.R R/Misc/Pre.hhohhoMaxARTFinal.Sim/pre.hho.simpact.parameters.R R/Misc/Pre.hhohhoMaxARTFinal.Sim/pre.hho.summary.statistics.creator.R R/Misc/Pre.hhohhoMaxARTFinal.Sim/simpact.mice.calibration.run.R R/Misc/SimpactCalibration/mice.calibration.Template.R R/Misc/SimpactCalibration/simpact.mice.calibration.run.Template.R R/Misc/SimpactWrapper/sim.summary.targets.creator.R R/Misc/SimpactWrapper/simpact.parameters.R R/Misc/SimpactWrapper/simpact.wrapper.easyABC.run.R R/Misc/SimpactWrapper/summary.statistics.creator.R R/Misc/emulator.simpact.best.R R/Misc/emulator.simpact.best.pca.R R/Misc/general.simple.simpact.emulator.R R/Misc/hhohhoMaxARTFinal.Sim/hhohho.sim.summary.targets.creator.R R/Misc/hhohhoMaxARTFinal.Sim/hhohho.simpact.parameters.R R/Misc/hhohhoMaxARTFinal.Sim/hhohho.simpact.wrapper.easyABC.run.R R/Misc/hhohhoMaxARTFinal.Sim/hhohho.summary.statistics.creator.R R/Misc/incidence-4000.Rmd
R/Misc/incidence-degree-exploration.100.RData
R/Misc/incidence-degree-exploration.500.RData
R/Misc/incidence-degree-exploration.5000.RData
R/Misc/incidence-degree-exploration.6000.RData
R/Misc/incidence-degree-exploration.Rmd
R/Misc/incidence-degree-exploration.html
R/Misc/mc.simpact.run.emulator.R R/Misc/pbdMPI.hhohho/pbdmpi.simpact.simulation.R R/Misc/pbdMPI.hhohho/pbdmpi.simpact.wrapper.R R/Misc/reverse.emulation.R R/Misc/shims.2011.incidence.plot.R R/Misc/simpact-emulator-knit.Rmd R/Misc/simpact.run.emulator.R R/Misc/simple.simpact.emulator.R R/Misc/simplest.reverse.emulator.R R/Misc/test.R R/VL.atARTinit.R R/VL.suppressed.R R/age.group.time.window.R R/agedif.median.R R/agedistr.creator.R R/agemix.df.maker.R R/agemixpatdat.R R/alive.infected.R R/cd4.vl.atARTinit.R R/client.facility.R R/concurrent.point.prevalence.R R/datalist.R R/degree.df.frac.R R/degree.df.maker.R R/degree.distr.fitter.R R/degree.hist.maker.R R/err.function.R R/hiv.infected.group.R R/hiv.negative.lifeyears.R R/incidence.calculator.R R/input.params.creator.R R/intervention.introduced.R R/life.years.lived.R R/pattern.modeller.R R/pattern.plotter.R R/persreldf.R R/pop.growth.calculator.R R/prevalence.calculator.R R/prevalence.plotter.R R/readthedata.R R/recruit.study.clients.R R/select.summary.params.R R/simpact.config.inputs.R R/simpact.config.inputs.add.sample.R R/simpact.config.inputs.par.select.R R/simpact.params.boundaries.R R/timespentsingle.calculator.R R/transm.network.builder.R R/varied.simpact.params.R R/vsc/ART.summary.plot.run.R
R/vsc/GenttestABCreject.SimpactRunEMU.pbs
R/vsc/NoART.summary.plot.run.R
R/vsc/Rep.pbsScript.SimpactRunEMU.sh
R/vsc/chpc.Rep.pbsScript.SimpactRun.sh
R/vsc/chpc.testABCreject.SimpactRun.pbs
R/vsc/gent.Rep.pbsScript.SimpactRun.sh
R/vsc/gent.delete.folder.pbs
R/vsc/gent.testABCreject.SimpactRun.pbs
R/vsc/simpact-emulator-knit-CLUSTER.R R/vsc/simpact-emulator-knit-pca.R R/vsc/simpact-emulator-knit.R R/vsc/simpact-emulator-knitSWAZI-pca.R R/vsc/simpact-emulator-knitSWAZI.R R/vsc/simpact.chunk.run.R R/vsc/simpact.config.inputsSWAZI.R R/vsc/simpact.mice.abc.test.R R/vsc/simpact.wrapper.easyABC.age.summary.plot.run.R R/vsc/simpact.wrapper.easyABC.run.R R/vsc/simpact.wrapper.easyABC.run.template.R R/vsc/simpact.wrapper.easyABC.runSWAZI.R R/vsc/simpact.wrapper.easyABC.summary.plot.run.R R/vsc/simpact.wrapper.easyABC.with.replace.run.R R/vsc/usefulfunctions.R README.md
RSimpactHelper.Rproj
data/agemixpatdat.rda
data/datalist.rda
data/persreldf.rda
man/ART.coverage.calculator.Rd man/ART.retention.Rd
man/Literature/.DS_Store
man/Literature/Anderson A modified next reaction method for simulating chemical systems with time dependent propensities and delays J Chem Phys 2007.pdf man/Literature/EasyABC manual.pdf man/Literature/EasyABC vignette.pdf man/Literature/Hankin multivator manual.pdf man/Literature/Mossong Modelling HIV incidence and survival from agespecific seroprevalence after antiretroviral treatment scale-up in rural South Africa AIDS 2013.pdf man/Literature/Zaidi Dramatic increase in HIV prevalence after scale-up of ART_AIDS 2013.pdf man/age.group.time.window.Rd man/agedif.median.Rd man/agedistr.creator.Rd man/agemix.df.maker.Rd man/agemixpatdat.Rd man/alive.infected.Rd man/art.person.years.Rd man/cd4.atARTinit.Rd man/cd4.vl.atARTinit.Rd man/client.facility.Rd man/concurr.pointprev.calculator.Rd man/datalist.Rd man/degree.df.frac.Rd man/degree.df.maker.Rd man/degree.distr.fitter.Rd man/degree.hist.maker.Rd man/err.function.Rd man/hiv.infected.group.Rd man/hiv.negative.lifeyears.Rd man/incidence.calculator.Rd man/input.params.creator.Rd man/intervention.introduced.Rd man/life.years.lived.Rd man/pattern.modeller.Rd man/pattern.plotter.Rd man/persreldf.Rd man/pop.growth.calculator.Rd man/prevalence.calculator.Rd man/prevalence.plotter.Rd man/readthedata.Rd man/recruit.study.clients.Rd man/select.summary.params.Rd man/simpact.config.inputs.Rd man/simpact.config.inputs.add.sample.Rd man/simpact.config.inputs.par.select.Rd man/simpact.params.boundaries.Rd man/timespentsingle.calculator.Rd man/transm.network.builder.Rd man/varied.simpact.params.Rd man/vl.atARTinit.Rd man/vl.suppressed.Rd
wdelva/RSimpactHelp documentation built on Dec. 17, 2017, 6:28 p.m.