Files in wiscstatman/EBSeq
An R package for gene and isoform differential expression analysis of RNA-seq data
DESCRIPTION
NAMESPACE
NEWS
R/DenNHist.R
R/EBMultiTest.R
R/EBSeqTest.R
R/EBTest.R
R/GetDEResults.R
R/GetMultiFC.R
R/GetMultiPP.R
R/GetNg.R
R/GetNormalizedMat.R
R/GetPPMat.R
R/GetPatterns.R
R/GetSelectedPatterns.R
R/Likefun.R
R/LikefunMulti.R
R/LogN.R
R/LogNMulti.R
R/MedianNorm.R
R/PlotPattern.R
R/PlotPostVsRawFC.R
R/PolyFitPlot.R
R/PostFC.R
R/QQP.R
R/QuantileNorm.R
R/RankNorm.R
R/beta.mom.R
R/crit_fun.R
R/f0.R
R/f1.R
README.md
build/vignette.rds
data/GeneMat.rda
data/IsoList.rda
data/IsoMultiList.rda
data/MultiGeneMat.rda
demo/00Index
demo/EBSeq.R
inst/doc/EBSeq_Vignette.R
inst/doc/EBSeq_Vignette.Rnw
inst/doc/EBSeq_Vignette.pdf
man/.Rhistory
man/DenNHist.Rd
man/EBMultiTest.Rd
man/EBSeqTest.Rd
man/EBSeq_NingLeng-package.Rd
man/EBTest.Rd
man/GeneMat.Rd
man/GetDEResults.Rd
man/GetMultiFC.Rd
man/GetMultiPP.Rd
man/GetNg.Rd
man/GetNormalizedMat.Rd
man/GetPPMat.Rd
man/GetPatterns.Rd
man/GetSelectedPatterns.Rd
man/IsoList.Rd
man/IsoMultiList.Rd
man/Likefun.Rd
man/LikefunMulti.Rd
man/LogN.Rd
man/LogNMulti.Rd
man/MedianNorm.Rd
man/MultiGeneMat.Rd
man/PlotPattern.Rd
man/PlotPostVsRawFC.Rd
man/PolyFitPlot.Rd
man/PostFC.Rd
man/QQP.Rd
man/QuantileNorm.Rd
man/RankNorm.Rd
man/beta.mom.Rd
man/crit_fun.Rd
man/f0.Rd
man/f1.Rd
src/EBSeq.hpp
src/Makevars
src/Makevars.win
src/Rexport.cpp
src/agglomerativeClustering.hpp
src/aggregate.hpp
src/counts.hpp
src/float.hpp
src/helper.hpp
src/loadData.hpp
src/negativeBinomial.hpp
src/partition.hpp
src/wrapper.hpp
vignettes/.Rhistory
vignettes/EBSeq_Vignette.Rnw
vignettes/EBSeq_Vignette.pdf
vignettes/PlotExample.png
vignettes/lengetal.bib
