DiffusionMap-class: Diffusion Map dimensionality reduction on dataset
In wjawaid/bglab: Berthold Gottgens lab scRNA seq
Description
Performed as designed by Florian Buettner
Slots
numberConvergedThe number of converged eigenvalues and eigenvectors when using
"rARPACK"
numberIterationsThe number of iterations to achieve convergence in "rARPACK".
sigmasValue of sigma used for the Gaussian
nnNumber of nearest neighours used
usedARPACKLogical indicating whether rARPACK was used for eigen deconstruction
gaussianPost applying Gaussian kernel.
markovGaussian with rows normalised giving stochastic transition matrix.
HH matrix.
d2Squared ditance matrix.
distfunFunction used to calculate distances.
wjawaid/bglab documentation built on May 4, 2019, 6:33 a.m.
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Description
Performed as designed by Florian Buettner
Slots
numberConvergedThe number of converged eigenvalues and eigenvectors when using "rARPACK"
numberIterationsThe number of iterations to achieve convergence in "rARPACK".
sigmasValue of sigma used for the Gaussian
nnNumber of nearest neighours used
usedARPACKLogical indicating whether rARPACK was used for eigen deconstruction
gaussianPost applying Gaussian kernel.
markovGaussian with rows normalised giving stochastic transition matrix.
HH matrix.
d2Squared ditance matrix.
distfunFunction used to calculate distances.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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